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tisdag 26 februari 2019

Semaforiineista ja niiden pilkkoutumisesta. ADAMTS1

Tässä lähdeartikkelissa maintiaan ADAMTS1 pilkkomassa esiin  SEMA3C.stä   N-erminaalista fragmenttia, jota erittyy  ECM.stä ja  joka vaikuttaa  tuumorin migroitumista ja  etäkasvua.  ADAMTS1 on jo aiemmin tunnettu  mm syöpäkakeksiassa ilmenevänä  metalloproteinaasina.
Metalloproteinaaseja,   niiden   valtavaa vaikutusta   ei vielä pystytä hallitsemaan lääkkeellisesti.


https://www.dovepress.com/impact-of-semaphorin-expression-on-prognostic-characteristics-in-breas-peer-reviewed-fulltext-article-BCTT
Ramesh Butti, Totakura VS Kumar, Ramakrishna Nimma, Gopal C Kundu

Laboratory of Tumor Biology, Angiogenesis and Nanomedicine Research, National Centre for Cell Science, Savitribai Phule Pune University, Pune, India

Abstract: Breast cancer is one of the major causes of cancer-related deaths among women worldwide. Aberrant regulation of various growth factors, cytokines, and other proteins and their receptors in cancer cells drives the activation of various oncogenic signaling pathways that lead to cancer progression. Semaphorins are a class of proteins which are differentially expressed in various types of cancer including breast cancer. Earlier, these proteins were known to have a major function in the nerve cell adhesion, migration, and development of the central nervous system. However, their role in the regulation of several aspects of tumor progression has eventually emerged. There are over 30 genes encoding the semaphorins, which are divided into eight subclasses. It has been reported that some members of semaphorin classes are antiangiogenic and antimetastatic in nature, whereas others act as proangiogenic and prometastatic genes. Because of their differential expression and role in angiogenesis and metastasis, semaphorins emerged as one of the important prognostic factors for appraising breast cancer progression.

Keywords:
breast cancer, tumor microenvironment, semaphorins, plexins, neuropilins, cancer stem-like cells, prognostic factor, angiogenesis, metastasis, epithelial to mesenchymal transition, vascular endothelial growth factor

  • "....The other members of class 3 semaphorins, such as Sema3C and Sema3E, are overexpressed in breast cancer cells and exhibit tumor-promoting function. Zhu et al have shown that siRNA-mediated knockdown of Sema3C in breast cancer cells abolishes cell proliferation and migration.49 Interestingly, the p65-Sema3C fragment that is generated from cleavage of full-length Sema3C by FPPC shows tumor-promoting role. Full-length Sema3C shows inhibitory effect on lymphangiogenesis and metastasis in mice breast tumor xenografts (Figure 2).50 Nonetheless, the metalloprotease ADAMTS1 induces Sema3C cleavage from ECM and converts it to a soluble form, so that it diffuses and promotes tumor cell migration.51 The role of Sema3C in regulation of tumor progression also depends on the type and nature of cancers. For example, Sema3C promotes pancreatic cancer progression through ERK1/2 signaling pathway.52 However, the molecular mechanism by which Sema3C promotes breast cancer progression is unclear.



. (Figure 1).26 Semaphorins also harbor other distinctive protein domains such as basic charged C-terminal domain, thrombospondin repeats, and immunoglobulin (Ig)-like domains. Class 3 semaphorins are characterized by a conserved, basic charged domain at the C-terminal region and these are secreted semaphorins (Figure 1).10 Class 4–7 semaphorins are cell membrane-anchored proteins that are characterized by their distinct structural elements. Thrombospondin repeats are present in case of class 5 semaphorins, whereas a glycophosphatidylinositol anchor is present in class 7 semaphorins (Figure 1). Membrane-anchored semaphorins can be further processed into soluble forms through the proteolytic cleavage at a specific site as in the case of class 4 and 7 semaphorins by ADAMTS1 and furin-like proprotein convertase (FPPC; Figure 1).27,28


Figure 2 Semaphorin signaling in breast cancer.
Notes: Sema3A interacts with NRP1 receptor to induce PTEN/FOXO 3a-dependent MelCAM expression, which, in turn, inhibits tumor growth and angiogenesis. Sema3B binds to NRP1 and induces apoptosis by inhibiting PI3K/Akt signaling. Full-length Sema3C interacts with NRP2 on the lymphatic endothelial cells in tumor and suppresses lymphangiogenesis and metastasis by inhibiting VEGF-C–dependent ERK1/2 and Akt signaling. Full-length Sema3C undergoes proteolytic cleavage by FPPC to form p65-Sema3C, which promotes cancer cell survival. Sema4D binds to plexin-B1 and activates ErbB2, which, in turn, phosphorylates plexin-B1. Phosphorylated plexin-B1 induces migration by activating RhoA GTPase. Cleaved p61-Sema3E binds to plexin-D1 to promote metastasis through ErbB2-dependent MAPK signaling. Sema3E binds to plexin-D1 to inhibit apoptosis by disrupting the interaction between plexin-D1 and NR4A, which is known to induce caspase-9–mediated apoptosis. Sema7A interacts with integrin β1 on the cancer cells to promote invasion. Tumor-derived Sema7A binds with integrin β1 on the macrophages to promote angiogenesis by producing CXCL2, CXCL1, and MMP-9.
Abbreviations: ERK1/2, extracellular signal-regulated kinases1/2; FPPC, furin-like proprotein convertase; MMP, matrix metalloproteinase; PTEN, phosphatase and tensin homolog; VEGFR, vascular endothelial growth factor receptor.

ADAMTS1 lisätietoa: pilkkoo semaforiinia SEMA3C ja edistää metastasoitumista

https://www.ncbi.nlm.nih.gov/pubmed/?term=ADAMTS1+%2C+semaphorins
2010 Jan 22;285(4):2463-73. doi: 10.1074/jbc.M109.055129. Epub 2009 Nov 13.

The cleavage of semaphorin 3C induced by ADAMTS1 promotes cell migration.

 
Metastasoituminen on sekventiaalinen prosessi, jossa soluille salliutuu  siirtyminen primäärituumorista muualle ksvamaan. Metalloproteinaaseja on ja kauan pidetty avainkomponenteina metastaattisessa ohjelmoitumisessa, koska niillä on kykyä  pilkkoa monenlaisia 
solunulkoisia signaloivia ja  adhesoituvia molekyylejä. Kuitenkin joidenkin metalloproteinaasien kuten ADAMTS1:n  funktio ei ole  ollut aivan selvä ja se näyttää riippuvan  solumiljööstä ja/tai tuumorin etenemisen  vaiheesta. Tässä artikkelin työssä haluttiin luonnehtia ADAMTS1 metalloproteaasin  funktioita ja suoritettiin kaksi  alternatiivista proteomiin perustuvaa tutkimusta tunnistettaessa  metalloproteinaasin uusia substraatteja. Kummatkin tutkimukset osoittivat, että ADAMTS1:n yli-ilmeneminen johti SEMA3C- semaforiinin  vapautumiseen extrasellulaarisesta  matriksista.  Vaikka tiedetäänkin jo, että semaforiinit ovat  aksonin ohjauksen säätelijöitä, on myös kertyvää näyttöä siitä, että ne osallistunevat myös tuumorin etenemiseen. Tässä työssä osoitettiin, että ADAMTS1:n indusoima semaforiinin SEMA3C  pilkkoutuminen edisti rintasyöpäsolujen migroitumista. Tämä viittaa siihen,  että näiden molekyylien samanaikaisilmenemä tuumoreissa saattaa osaltaan vaikutata  metastaattiseen ohjelmoitumiseen. 

  • Metastasis is a sequential process that allows cells to move from the primary tumor and grow elsewhere. Because of their ability to cleave a variety of extracellular signaling and adhesion molecules, metalloproteases have been long considered key components of the metastatic program. However, the function of certain metalloproteases, such as ADAMTS1, is not clear and seems to depend on the cellular environment and/or the stage of tumor progression. To characterize the function of ADAMTS1, we performed two alternative proteomic approaches, difference gel electrophoresis and stable isotope labeling by amino acids in cell culture, to identify novel substrates of the metalloprotease. Both techniques showed that overexpression of ADAMTS1 leads to the release of semaphorin 3C from the extracellular matrix. Although semaphorins are well known regulators of axon guidance, accumulating evidence shows that they may also participate in tumor progression. Here, we show that the cleavage of semaphorin 3C induced by ADAMTS1 promotes the migration of breast cancer cells, indicating that the co-expression of these molecules in tumors may contribute to the metastatic program.
PMID:
19915008
PMCID:
PMC2807303
DOI:
10.1074/jbc.M109.055129
[Indexed for MEDLINE]
Free PMC Article
Muistiin  26.2. 2019 

måndag 21 april 2014

ADAMTS 1 tietämyksestä. Perisyytti. Syöpäkakeksia?

 Kromosomin 21 geenejä

Recommended name:(Suositeltu nimi)
A disintegrin and metalloproteinase with thrombospondin motifs 1

Short name=ADAM-TS 1
Short name=ADAM-TS1
Short name=ADAMTS-1
EC=3.4.24.-
Alternative name(s):(Vaihtoehtoinen nimi).
METH-1
Gene names
Name:ADAMTS1 (varsinainen nimi)
Synonyms:KIAA1346, METH1, (Geenin nimet)
  • Protein attributes  (Tämän geenin koodaamasta proteiinista)
Sequence length967 AA.(967 aminohappoa)
Sequence statusComplete.( Koko aminohappojärjestys on saatu selvitettyä)
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level
  • General annotation (Comments) (Yleistä asiaa)
FunctionCleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover By similarity. Has angiogenic inhibitor activity. Active metalloprotease, which may be associated with various inflammatory processes as well as development of cancer cachexia. May play a critical role in follicular rupture. Ref.2
(Funktio: Pilkkoo aggrekaania, ruston proteoglykaania, ja  voi osallistua sen turn over tapahtumaan. Omaa angiogeeneesiä estävää vaikutusta.  On aktiivi metalloproteaasi, jolla lienee osuutta erilaisissa tulehdusprosesseissa kuten syövän kakeksian kehittymisessä.  Sillä voi olla kriittinen osuus follikkelin rupturoitumisessa (fertiliteetissä) 
Catalytic activityCleaves aggrecan at the 1938-Glu-|-Leu-1939 site, within the chondroitin sulfate attachment domain.Katalyyttinen aktiivisuus: Pilkkoo aggrekaania 1938Glu- 1939Leu kohdasta,  kondroitiinisulfaatin(CS)  kiinnittymiskohdassa.
CofactorBinds 1 zinc ion per subunit Kofaktoritoiminta: Sitoo yhden sinkkijonin alayksikköä kohden. . Ref.8
Subcellular locationSecretedextracellular spaceextracellular matrix By similarity. Subsellulaarinen sijainti: Erittyy solun ulkoiseen tilaan. 
Spacer- domaani ja TSP-1 tyyppinen domaani ovat tärkeitä tiukassa interaktiossa ECM extrasellulaarimatriksiin.
DomainThe spacer domain and the TSP type-1 domains are important for a tight interaction with the extracellular matrix.
The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.Konservoitunut cysteiini Cys- vaihde-motiivissa sitoutuu katalyyttiseen sinkkijoniin täten inhiboiden entsyymiä. Kun cysteiini erkanee sinkkijonista peptidin aktivaatiossa niin entsyymin  aktiviteetti päsee  alkamaan..
Post-translational modificationThe precursor is cleaved by a furin endopeptidase By similarity. Esimuoto prekursori pilkkoutuu furiini-endopeptidaasilla (FU).
Glycosylated. Can be O-fucosylated by POFUT2 on a serine or a threonine residue found within the consensus sequence C1-X(2)-(S/T)-C2-G of the TSP type-1 repeat domains where C1 and C2 are the first and second cysteine residue of the repeat, respectively. Fucosylated repeats can then be further glycosylated by the addition of a beta-1,3-glucose residue by the glucosyltransferase, B3GALTL. Fucosylation mediates the efficient secretion of ADAMTS family members. Also can be C-glycosylated with one or two mannose molecules on tryptophan residues within the consensus sequence W-X-X-W of the TPRs, and N-glycosylated. These other glycosylations can also facilitate secretion By similarity.
Glykosyloitunut.  Voi O-fukosyloitua POFUT2 entsyymillä  seriini tai treoniinitähteeseen (S/T) joita on consensussekvenssissä TSP-1  tyyppisessä toistojaksossa , joissa C1 ja C2 ovat  jakson C1-X(2)-(S/T)-C2-G  ensimmäinen ja toinen cysteiinitähde. Fukosyloituneet tähteet voivat siten glykosyloitua edelleen lisäämällä beta-1,3-glukoositähteitä glukosyylitransferaasilla B3GALTL. Fukosylaatio välittää ADAMTS perheen jäsenten tehokasta erittymistä. Voi myös C-glykosyloitua parilla mannoosilla tryptofaanitähteeseen TPR:n consensussekvenssin W-X-X-W alueella  ja voi myös N-glykosyloitua.Nämä muut glykosylaatiot voivat myös kiihdyttää erittymistä. 
Sequence similaritiesContains 1 disintegrin domain. Sisältää yhden disintegraani domaanin.
Contains 1 peptidase M12B domain. Sisältää yhden M12B peptidaasisomaanin.
Contains 3 TSP type-1 domains.Sisältää 3 TSP tyyppi-1 domaania.
Sequence cautionThe sequence AAD48080.1 differs from that shown. Reason: Erroneous initiation.
The sequence BAA92584.1 differs from that shown. Reason: Erroneous initiation.
Q9UHI8 [UniParc]. Last modified January 23, 2007.
Version 4. Checksum: 334119D6310A05A7 FASTA 967 105,358
10 20 30 40 50 60
 MQRAVPEGFG RRKLGSDMGN AERAPGSRSF GPVPTLLLLA AALLAVSDAL GRPSEEDEEL
 70 80 90 100 110 120
 VVPELERAPG HGTTRLRLHA FDQQLDLELR PDSSFLAPGF TLQNVGRKSG SETPLPETDL
 130 140 150 160 170 180
 AHCFYSGTVN GDPSSAAALS LCEGVRGAFY LLGEAYFIQP LPAASERLAT AAPGEKPPAP
 190 200 210 220 230 240
LQFHLLRRNR QGDVGGTCGV VDDEPRPTGK AETEDEDEGT EGEDEGAQWS PQDPALQGVG 250 260 270 280 290 300
 QPTGTGSIRK KRFVSSHRYV ETMLVADQSM AEFHGSGLKH YLLTLFSVAA RLYKHPSIRN
 310 320 330 340 350 360
 SVSLVVVKIL VIHDEQKGPE VTSNAALTLR NFCNWQKQHN PPSDRDAEHY DTAILFTRQD 370 380 390 400 410 420
 LCGSQTCDTL GMADVGTVCD PSRSCSVIED DGLQAAFTTA HELGHVFNMP HDDAKQCASL 430 440 450 460 470 480
 NGVNQDSHMM ASMLSNLDHS QPWSPCSAYM ITSFLDNGHG ECLMDKPQNP IQLPGDLPGT
490 500 510 520 530 540
 SYDANRQCQF TFGEDSKHCP DAASTCSTLW CTGTSGGVLV CQTKHFPWAD GTSCGEGKWC
550 560 570 580 590 600 
 INGKCVNKTD RKHFDTPFHG SWGMWGPWGD CSRTCGGGVQ YTMRECDNPV PKNGGKYCEG
 610 620 630 640 650 660
 KRVRYRSCNL EDCPDNNGKT FREEQCEAHN EFSKASFGSG PAVEWIPKYA GVSPKDRCKL 670 680 690 700 710 720
 ICQAKGIGYF FVLQPKVVDG TPCSPDSTSV CVQGQCVKAG CDRIIDSKKK FDKCGVCGGN 730 740 750 760 770 780
GSTCKKISGS VTSAKPGYHD IITIPTGATN IEVKQRNQRG SRNNGSFLAI KAADGTYILN
 790 800 810 820 830 840
 GDYTLSTLEQ DIMYKGVVLR YSGSSAALER IRSFSPLKEP LTIQVLTVGN ALRPKIKYTY
 850 860 870 880 890 900
 FVKKKKESFN AIPTFSAWVI EEWGECSKSC ELGWQRRLVE CRDINGQPAS ECAKEVKPAS 910 920 930 940 950 960
 TRPCADHPCP QWQLGEWSSC SKTCGKGYKK RSLKCLSHDG GVLSHESCDP LKKPKHFIDF CTMAECS
  • DISINTEGRIINIDOMAANIN aminohapot:;sp|Q9UHI8|476-559 yllä painettu vahvemmalla ja alla merkattu erikseen.(Oma kommentti)
...//DLPGTSYDANRQCQFTFGEDSKHCPDAASTCSTLWCTGTSGGVLVCQTKHFPWADGTSCG
EGKWCINGKCVNKTDRKHFDTPFH
//...
Essentiellien aminohappojen % suhde koko pätkästä 38%. Jos otetaan essentiellien puollelle " hyvän terveyden" aminohapot Histidiini (H)  ja Arginiini(R), prosenttiluku saadaan 43%ksi.
ADMTS 1 sijaitse   kromosomissa 21, jonka  sairaustiloissa on monia  neurodegeneratiivisi tauteja.  . Tässä on vain yksi funktionaalinen pätkä katsottuna.(Oma kommentti)
LISÄTIETOA http://atlasgeneticsoncology.org/Genes/ADAMTS1ID574ch21q21.html
Kr. 21 q21.3

ADAMTS1 precursor: 967 amino acids; 105358 Da.




Structure of ADAMTS1 proteinase. ADAMTS1 is composed of a propeptide (Pro), a metalloproteinase domain (Metallo), a disintegrin domain (Dis), a thrombospondin type 1-like motif (TSP1), a cystein-rich domain (Cysrich), a spacer domain (SP) followed by two additional thrombospondin type 1-like motifs (TSP1). ADAMTS1 proteinase contains in addition a sequence recognized by furin-like enzymes (FU) (Rocks et al., 2008a).

Viimevuosien tietoa
 http://www.ncbi.nlm.nih.gov/pubmed/22383695
TIMP-3 on ADAMTS1 estäjä. Perisyytin vaurion merkki on ADAMTS1 ylössäätymä ( ja TIMP3 alassäätymä). TIMP-3 stabiloi perisyyttiä ja ADAMTS1 destabiloi,  Perisyytin vaurio säätää  destabilaatiotilaa esiin ja täten  fibroosin välttöä korjauksessa.

Figure 10.(Tämä kuva on OIKEIN HYVÄ ja antaa  näistä  viima-aikaisemmista tietoa lisäävistä  verisuonisäätelijöistä  hyvän käsityksen) 
Schematic diagram illustrating the contribution of TIMP-2 and -3 to pericyte-induced vascular tube stabilization. As shown, TIMP-2 is derived from ECs, whereas TIMP-3 is produced by pericytes. Together, they contribute to vascular stabilization by inhibiting a variety of MMPs, ADAMs, and VEGFR-2. The initiation of tube stabilization requires the blockade of both EC tube formation and EC tube regression, which further leads to the cessation of EC activation and the development of EC quiescence. We hypothesize that pericytes are required for ECs to assemble basement membrane matrices, which locally capture and present TIMP-3 to ECs through heparan sulfate proteoglycans such as perlecan.